業績

2026

• 1.

  Koiwai, K., Jaree, P., Nanthajak, K., Harada, M., Kusaka, H., Sinprasertporn, A., Yuasa, H., Konishi, K., Nozaki, R., Kondo, H., Thawonsuwan, J., Somboonwiwat, K., Hirono, I. (2026). Single-cell RNA-seq reveals cellular dynamics and emergency hematopoiesis in banana shrimp Penaeus merguiensis hemocytes upon Yellow Head Virus infection. Fish & Shellfish Immunology, 171, 111178.

  DOI: 10.1016/j.fsi.2026.111178 🏠 Primary Lab
• 2.

  Hao, L., Kawato, S., Nozaki, R., Furukawa, M., Kondo, H., Hirono, I. (2026). Imagin : An Integrase-Like Gene Conserved Across Malacostracan Crustaceans Derived From a Ginger1 DNA Transposon. Genome Biology and Evolution, 18.

  DOI: 10.1093/gbe/evag010 🏠 Primary Lab
• 3.

  Alolod, G., Guzman, J., Bermeo‐Capunong, M., Konishi, K., Koiwai, K., Kondo, H., Hirono, I. (2026). Metagenomic Insights on the Progression of White Muscle Disease in Kuruma Shrimp ( Penaeus japonicus ) Caused by Photobacterium damselae subsp. damselae . Journal of Fish Diseases.

  DOI: 10.1111/jfd.70117 🏠 Primary Lab
• 4.

  Shirasawa, K., Yoshitake, K., Kondo, H., Kikuchi, S., Koiwai, K., Fujii, S. (2026). Chromosome-scale genome assembly of Malcolmia littorea using long-read sequencing and single-pollen genotyping technologies. DNA Research, 33.

  DOI: 10.1093/dnares/dsag001 🤝 Collaboration
• 5.

  Guzman, J., Gargano, C., Hao, L., Alolod, G., Nozaki, R., Koiwai, K., Kondo, H., Hirono, I. (2026). Role of a ficolin in the innate immune mechanisms of Penaeus vannamei against Vibrio parahaemolyticus. Fish & Shellfish Immunology, 168, 110950.

  DOI: 10.1016/j.fsi.2025.110950 🏠 Primary Lab

2025

• 1.

  Yoshimura, K., Furukawa, M., Konishi, K., Nozaki, R., Yoshii, K., Harakawa, S., Kawato, S., Koiwai, K., Hirono, I., Kondo, H. (2025). Genomic Characterisation of Red Sea Bream Iridovirus (RSIV) Samples Collected in Japan in 2024 Revealed Genotype II and the First Detection of the Intermediate Type in Japan. Journal of Fish Diseases.

  DOI: 10.1111/jfd.70108 🏠 Primary Lab
• 2.

  Yamamoto, S., Yoshimura, K., Konishi, K., Nozaki, R., Hirono, I., Koiwai, K. (2025). Microfluidic droplet cultivation preserves microalgae diversity in screening systems. Scientific Reports, 16.

  DOI: 10.1038/s41598-025-31621-x 🤝 Collaboration
• 3.

  Guzman, J., Gargano, C., Aoki, M., Kuwahara, H., Koiwai, K., Kondo, H., Hirono, I. (2025). Freeze‐Dried Lactiplantibacillus plantarum Regulates Formation of Extracellular Traps in Penaeus vannamei Ex Vivo. Journal of Fish Diseases.

  DOI: 10.1111/jfd.70092 🏠 Primary Lab
• 4.

  Baba, S., Koyama, T., Komatsu, D., Uchino, T., Midorikawa, Y., Takano, Y., Mori, T., Takagi, Y., Wada, S., Kondo, H., Matsumoto, M., Kato, G., Sano, M. (2025). Development of an effective DNA vaccine against ayu atypical cellular gill disease using draft genome information of the causative agent, Plecoglossus altivelis poxvirus. Virology, 612, 110671.

  DOI: 10.1016/j.virol.2025.110671 🤝 Collaboration
• 5.

  Mwamburi, S., Guzman, J., Konishi, K., Nozaki, R., Hattori, N., Koiwai, K., Hirono, I., Kondo, H. (2025). Exploring the gut microbiota of Siganus fuscescens with inferred functional roles in nutrient utilization. Fisheries Science, 91, 1263-1275.

  DOI: 10.1007/s12562-025-01925-y 🏠 Primary Lab
• 6.

  Alolod, G., Guzman, J., Matsumoto, S., Koiwai, K., Kondo, H., Hirono, I. (2025). Disturbance in muscular calcium homeostasis plays key role in the pathogenesis of white muscle disease in Kuruma shrimp (Penaeus japonicus) based on transcriptome analyses of mRNA and circRNA. Fisheries Science, 91, 1345-1358.

  DOI: 10.1007/s12562-025-01919-w 🏠 Primary Lab
• 7.

  Irie, A., Maeda, H., Tanabe, A., Sahara, H., Nozaki, R., Kondo, H., Kanaji, Y., Kanda, N., Murase, H. (2025). Inter-population variability in DNA methylation-based chronological age estimation model described from common bottlenose dolphin Tursiops truncatus. Fisheries Science, 91, 1203-1215.

  DOI: 10.1007/s12562-025-01907-0 🤝 Collaboration
• 8.

  Guzman, J., Mwamburi, S., Lurkpranee, S., Koiwai, K., Kondo, H., Hirono, I. (2025). Machine Learning‐Aided Meta‐Analysis Reveals Changes in Penaeus vannamei Gut Bacterial Communities Upon Dietary Supplementation‐Induced Immunostimulation. Journal of Fish Diseases, 49.

  DOI: 10.1111/jfd.70043 🏠 Primary Lab
• 9.

  Sakulworakan, R., Nozaki, R., Koiwai, K., Hirono, I., Kondo, H. (2025). Functional characterization of colony-stimulating factors in cytokine modulation and phagocytic cell activation in Japanese flounder. Fish & Shellfish Immunology, 166, 110650.

  DOI: 10.1016/j.fsi.2025.110650 🏠 Primary Lab
• 10.

  Homsombat, T., Yoshii, K., Fukuda, Y., Koiwai, K., Hirono, I., Kondo, H. (2025). Comparative Genomics of Edwardsiella piscicida in the Japanese Flounder ( Paralichthys olivaceus ): Discovery and Implications of a Novel Genomic Island. Journal of Fish Diseases, 49.

  DOI: 10.1111/jfd.70035 🏠 Primary Lab
• 11.

  Sakamoto, Y., Imaizumi, K., Kawato, S., Furukawa, M., Konishi, K., Nozaki, R., Koiwai, K., Kondo, H., Hirono, I. (2025). Co‐Infection of Fungi and Bacteria in the Gills of Kuruma Shrimp ( Penaeus japonicus ) Afflicted by Fusarium Disease. Journal of Fish Diseases, 48.

  DOI: 10.1111/jfd.14167 🏠 Primary Lab
• 12.

  Gargano, C., Mauro, M., Martino, C., Queiroz, V., Vizzini, A., Luparello, C., Badalamenti, R., Bellistrì, F., Cuttitta, A., Kondo, H., Longo, F., Arizza, V., Vazzana, M. (2025). Shark immune system: A review about their immunoglobulin repertoire. Fish & Shellfish Immunology, 160, 110187.

  DOI: 10.1016/j.fsi.2025.110187 🤝 Collaboration
• 13.

  Ji, J., Kawai, S., Takagi, R., Koiwai, K., Kawano, R., Tagawa, Y. (2025). Generation of cell-sized liposomes using laser-induced microjets. Lab on a Chip, 25, 2644-2653.

  DOI: 10.1039/d5lc00149h 🤝 Collaboration
• 14.

  Pooljun, C., Jariyapong, P., Laksana-aut, P., Hirono, I., Wuthisuthimethavee, S. (2025). Enhancing Pacific white shrimp immunity against Vibrio parahaemolyticus through β-glucan supplementation from marine diatoms. Veterinary World, 1047-1058.

  DOI: 10.14202/vetworld.2025.1047-1058 🤝 Collaboration
• 15.

  Yoshizawa, S., Konishi, K., Koiwai, K., Hirono, I., Kondo, H. (2025). Organ-specific repertoires of IgNAR gene in a cartilaginous fish. Fish & Shellfish Immunology, 161, 110299.

  DOI: 10.1016/j.fsi.2025.110299 🏠 Primary Lab
• 16.

  Yu, J., Yuasa, H., Hirono, I., Koiwai, K., Mori, T. (2025). Dielectrophoresis for Isolating Low-Abundance Bacteria Obscured by Impurities in Environmental Samples. Marine Biotechnology, 27.

  DOI: 10.1007/s10126-025-10441-0 🤝 Collaboration
• 17.

  Guzman, J., Mwamburi, S., Konishi, K., Aoki, M., Kuwahara, H., Mikata, K., Koiwai, K., Kondo, H., Hirono, I. (2025). Assessing the impact of Lactiplantibacillus plantarum feed additive on Vibrio parahaemolyticus crosstalk and the gill and gut microbiota compositions in Penaeus vannamei. Aquaculture, 598, 742092.

  DOI: 10.1016/j.aquaculture.2024.742092 🏠 Primary Lab
• 18.

  Yuasa, H., Koiwai, K., Konishi, K., Furukawa, M., Nozaki, R., Kondo, H., Hirono, I. (2025). Genome sequence of Vibrio harveyi strain TUMSAT-2019, isolated from kuruma shrimp, Penaeus japonicus. Microbiology Resource Announcements, 14.

  DOI: 10.1128/mra.00746-24 🏠 Primary Lab
• 19.

  Igarashi, K., Tanabe, A., Sahara, H., Nozaki, R., Kondo, H., Katsumata, T., Tamura, S., Yamakoshi, T., Mori, M., Miyagi, M., Nakamura, G., Kanda, N., Murase, H. (2025). Application of DNA Methylation–Based Age Estimation to Construct an Age Structure of Humpback Whales in a Newly Emerged Wintering Ground Around Hachijojima Island, Tokyo Metropolis, Japan. Ecology and Evolution, 15.

  DOI: 10.1002/ece3.70854 🤝 Collaboration
• 20.

  Guzman, J., Nozaki, R., Aoki, M., Kuwahara, H., Mikata, K., Koiwai, K., Kondo, H., Hirono, I. (2025). Transcriptome analyses of mRNA and circular RNA reveal dietary supplementation with freeze-dried Lactiplantibacillus plantarum primes immune memory of Whiteleg shrimp (Penaeus vannamei) against pathogens. Fish & Shellfish Immunology, 157, 110091.

  DOI: 10.1016/j.fsi.2024.110091 🏠 Primary Lab
• 21.

  Takase, K., Harakawa, A., Yokota, M., Lau, L., Amano, Y., Ichida, K., Koiwai, K., Hirono, I., Kondo, H. (2025). Effects of anti-rainbow trout germ-cell monoclonal antibody on germ cells and gonadal tissues in rainbow trout (Oncorhynchus mykiss). Aquaculture, 595, 741605.

  DOI: 10.1016/j.aquaculture.2024.741605 🏠 Primary Lab
• 22.

  Kobayashi, Y., Hashizume, H., Takiguchi, S., Ji, J., Kawano, R., Koiwai, K., Yamamoto, H., Elbadawy, M., Omatsu, T., Abugomaa, A., Kaneda, M., Usui, T., Sasaki, K. (2025). A microfluidics platform for simultaneous evaluation of sensitivity and side effects of anti-cancer drugs using a three-dimensional culture method. Scientific Reports, 15.

  DOI: 10.1038/s41598-024-84297-0 🤝 Collaboration

2024

• 1.

  Koyama, H., Maeda, A., Zhai, P., Koiwai, K., Kurose, K. (2024). Development of RT h-CLAT, a Rapid Assessment Method for Skin Sensitizers Using THP-1 Cells as a Biosensor. Biosensors, 14, 632.

  DOI: 10.3390/bios14120632 🤝 Collaboration
• 2.

  Elfadadny, M., Furukawa, M., Nozaki, R., Kawato, S., Koiwai, K., Kondo, H., Hirono, I. (2024). Effect of organic selenium on performance and gill transcriptome of whiteleg shrimp Penaeus vannamei. Molecular Biology Reports, 52.

  DOI: 10.1007/s11033-024-10147-x 🏠 Primary Lab
• 3.

  Alolod, G., Matsumoto, S., Koiwai, K., Kondo, H., Hirono, I. (2024). First report of white muscle disease caused by Photobacterium damselae subsp. damselae in Kuruma shrimp (Penaeus japonicus). Aquaculture, 593, 741278.

  DOI: 10.1016/j.aquaculture.2024.741278 🏠 Primary Lab
• 4.

  Puttirungroj, P., Kawato, S., Mwamburi, S., Furukawa, M., Oomine, R., Koiwai, K., Kondo, H., Hirono, I. (2024). Comparative genomics highlights the virulence and evolutionary trajectory of white spot syndrome virus. Journal of General Virology, 105.

  DOI: 10.1099/jgv.0.002042 🏠 Primary Lab
• 5.

  Saito, H., Lau, L., Minami, S., Yuguchi, M., Matsumoto, M., Nakanishi, T., Kondo, H., Kato, G., Sano, M. (2024). Cell-mediated and humoral immune responses of cyprinids induced by a live attenuated vaccine against cyprinid herpesvirus 2 infection in comparison to the virus non-permissive high temperature water treatment. Fish & Shellfish Immunology, 154, 109991.

  DOI: 10.1016/j.fsi.2024.109991 🤝 Collaboration
• 6.

  Wayha, S., Koiwai, K., Sano, M., Hirono, I., Kondo, H. (2024). Application of nervous necrosis virus capsid protein-based antigen-presenting particles for vaccine development. Fish & Shellfish Immunology, 152, 109803.

  DOI: 10.1016/j.fsi.2024.109803 🏠 Primary Lab
• 7.

  Anantasuk, N., Phurahong, T., Pumchan, A., Hirono, I., Unajak, S. (2024). Molecular characterization and bivalent vaccine development of Aeromonas hydrophila and Aeromonas veronii in Nile tilapia (Oreochromis niloticus). Aquaculture, 590, 741042.

  DOI: 10.1016/j.aquaculture.2024.741042 🤝 Collaboration
• 8.

  Yoshizawa, S., Ishida, Y., Nakashima, C., Murotani, F., Hara, T., Yoshii, K., Yamada, H., Fukuda, Y., Nozaki, R., Koiwai, K., Hirono, I., Kondo, H. (2024). Systemic immune responses do not affect significant immune responses in the skin. Fish & Shellfish Immunology, 152, 109756.

  DOI: 10.1016/j.fsi.2024.109756 🏠 Primary Lab
• 9.

  Weawsawang, W., Homsombat, T., Nuanmanee, S., Saleetid, N., Thawonsuwan, J., Pumchan, A., Hirono, I., Kondo, H., Unajak, S. (2024). Characterization of Photobacterium damselae subsp. damselae isolated from diseased Asian seabass (Lates calcarifer) and the preliminary development of a formalin‐killed cell vaccine. Journal of Fish Diseases, 47.

  DOI: 10.1111/jfd.13987 🤝 Collaboration
• 10.

  Imaizumi, K., Nozaki, R., Konishi, K., Tagishi, H., Miura, T., Kondo, H., Hirono, I. (2024). Investigating the impact of chlorine dioxide in shrimp-rearing water on the stomach microbiome, gill transcriptome, and infection-related mortality in shrimp. Journal of Applied Microbiology, 135.

  DOI: 10.1093/jambio/lxae176 🏠 Primary Lab
• 11.

  Pumchan, A., Proespraiwong, P., Sawatdichaikul, O., Phurahong, T., Hirono, I., Unajak, S. (2024). Computational design of novel chimeric multiepitope vaccine against bacterial and viral disease in tilapia (Oreochromis sp.). Scientific Reports, 14.

  DOI: 10.1038/s41598-024-64383-z 🤝 Collaboration
• 12.

  Elfadadny, M., Mwamburi, S., Kondo, H., Hirono, I. (2024). Effects of organic selenium-containing diets on Penaeus vannamei molecular response under induced heat stress challenge. Fisheries Science, 90, 755-771.

  DOI: 10.1007/s12562-024-01801-1 🏠 Primary Lab
• 13.

  Mwamburi, S., Kawato, S., Furukawa, M., Konishi, K., Nozaki, R., Hirono, I., Kondo, H. (2024). De Novo Assembly and Annotation of the Siganus fuscescens (Houttuyn, 1782) Genome: Marking a Pioneering Advance for the Siganidae Family. Marine Biotechnology, 26, 902-916.

  DOI: 10.1007/s10126-024-10325-9 🏠 Primary Lab
• 14.

  Mori, M., Maeda, H., Tanabe, A., Sahara, H., Nozaki, R., Kondo, H., Nakamura, G., Kanda, N., Murase, H. (2024). Estimation of chronological age of Risso’s dolphin (Grampus griseus) based on DNA methylation frequency. Frontiers in Marine Science, 11.

  DOI: 10.3389/fmars.2024.1391674 🤝 Collaboration
• 15.

  Bahrioğlu, E., Kondo, H., Hırono, I. (2024). Effects of inactivated Streptococcus iniae, Edwardsiella tarda, and Poly I:C on mRNA Expression Levels of CXCL-10 and CXCL-9 Genes in Japanese Flounder. Acta Aquatica Turcica, 20, 128-139.

  DOI: 10.22392/actaquatr.1312305 🤝 Collaboration
• 16.

  Alaman, O., Pedrosa-Gerasmio, I., Koiwai, K., Nozaki, R., Kondo, H., Hirono, I. (2024). Molecular characterization of a short-chained pentraxin gene from kuruma shrimp Marsupenaeus japonicus hemocytes. Fish & Shellfish Immunology, 149, 109548.

  DOI: 10.1016/j.fsi.2024.109548 🏠 Primary Lab
• 17.

  Matsumoto, M., Chien, T., Machida, Y., Matoyama, H., Kishihara, T., Sato, S., Kawato, S., Hirono, I., Sano, M., Kato, G. (2024). Mycolicibacterium cyprinidarum sp. nov., a rapidly growing species isolated from diseased koi carp, Cyprinus carpio. International Journal of Systematic and Evolutionary Microbiology, 74.

  DOI: 10.1099/ijsem.0.006404 🤝 Collaboration
• 18.

  Thanomchaisanit, P., Koiwai, K., Osawa, Y., Kuwahara, D., Nohara, S., Kondo, H., Hirono, I. (2024). Astaxanthin supplementation enhances low-temperature stress tolerance, immune-related genes, and resistance to Vibrio parahaemolyticus in Whiteleg Shrimp Penaeus vannamei. Fisheries Science, 90, 621-633.

  DOI: 10.1007/s12562-024-01777-y 🏠 Primary Lab
• 19.

  Chaisri, N., Jaengphop, C., Hirono, I., Unajak, S. (2024). Rapid Apta-Chromogenic Detection Method for Nitrofuran Metabolite Determination. Molecules, 29, 1720.

  DOI: 10.3390/molecules29081720 🤝 Collaboration
• 20.

  Lanza, A., Kimura, S., Hirono, I., Yoshitake, K., Kinoshita, S., Asakawa, S. (2024). Transcriptome analysis of Edwardsiella piscicida during intracellular infection reveals excludons are involved with the activation of a mitochondrion-like energy generation program. mBio, 15.

  DOI: 10.1128/mbio.03526-23 🤝 Collaboration
• 21.

  Omori, R., Hagino, T., Pattama, P., Ozaki, K., Hirono, I. (2024). Estimating the basic reproduction number and final epidemic size of white spot syndrome virus outbreak in Penaeus japonicus in aquaculture ponds. Aquaculture, 582, 740548.

  DOI: 10.1016/j.aquaculture.2024.740548 🤝 Collaboration
• 22.

  Izumi, K., Ji, J., Koiwai, K., Kawano, R. (2024). Long-Term Stable Liposome Modified by PEG-Lipid in Natural Seawater. ACS Omega, 9, 10958-10966.

  DOI: 10.1021/acsomega.3c10346 🤝 Collaboration
• 23.

  Kawato, S., Nozaki, R., Kondo, H., Hirono, I. (2024). Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis. Access Microbiology, 6.

  DOI: 10.1099/acmi.0.000592.v3 🏠 Primary Lab
• 24.

  Hiransuchalert, R., Poarsa, C., Yocawibun, P., Amparyup, P., Taranart, T., Wachirachaikarn, A., Wongphayak, S., Kondo, H., Hirono, I. (2024). Transcriptome analysis and identification of differentially expressed genes between early and mature ovarian stages in the female mantis shrimp (Harpiosquilla raphidea) using RNA-Seq. Aquaculture Reports, 34, 101910.

  DOI: 10.1016/j.aqrep.2023.101910 🏠 Primary Lab
• 25.

  Dinh-Hung, N., Dong, H., Senapin, S., Shinn, A., Linh, N., Dien, L., Soontara, C., Hirono, I., Chatchaiphan, S., Rodkhum, C. (2024). Using ozone nanobubbles to mitigate the risk of mycobacteriosis in Siamese fighting fish (Betta splendens). Aquaculture, 581, 740390.

  DOI: 10.1016/j.aquaculture.2023.740390 🤝 Collaboration
• 26.

  Arai, T., Koiwai, K., Nozaki, R., Kondo, H., Hirono, I., Suzuki, H., Kamiya, M. (2024). Field survey of the phase and sex ratios of the brown alga Dictyota dichotoma (Dictyotales, Phaeophyceae) using sex‐specific molecular markers. Phycological Research, 72, 123-132.

  DOI: 10.1111/pre.12544 🤝 Collaboration
• 27.

  Kawato, S., Nozaki, R., Kondo, H., Hirono, I. (2024). Integrase-associated niche differentiation of endogenous large DNA viruses in crustaceans. Microbiology Spectrum, 12.

  DOI: 10.1128/spectrum.00559-23 🏠 Primary Lab
• 28.

  Patkaew, S., DirekbusarakoKm, S., Hirono, I., Wuthisuthimethavee, S., Powtongsook, S., Pooljun, C. (2024). Effect of supersaturated dissolved oxygen on growth-, survival-, and immune-related gene expression of Pacific white shrimp (Litopenaeus vannamei). Veterinary World, 50-58.

  DOI: 10.14202/vetworld.2024.50-58 🤝 Collaboration
• 29.

  Saito, H., Minami, S., Yuguchi, M., Shitara, A., Kondo, H., Kato, G., Sano, M. (2024). Efficient showering vaccination with a live attenuated vaccine against herpesviral hematopoietic necrosis in goldfish. Aquaculture, 578, 740140.

  DOI: 10.1016/j.aquaculture.2023.740140 🤝 Collaboration
• 30.

  Dinh-Hung, N., Dong, H., Senapin, S., Linh, N., Shinn, A., Pirarat, N., Hirono, I., Chatchaiphan, S., Rodkhum, C. (2024). Infection and histopathological consequences in Siamese fighting fish (Betta splendens) due to exposure to a pathogenic Mycobacterium chelonae via different routes. Aquaculture, 579, 740191.

  DOI: 10.1016/j.aquaculture.2023.740191 🤝 Collaboration

2023

• 1.

  Saito, H., Minami, S., Yuguchi, M., Shitara, A., Kondo, H., Kato, G., Sano, M. (2023). Effect of temperature on the protective efficacy of a live attenuated vaccine against herpesviral haematopoietic necrosis in goldfish. Journal of Fish Diseases, 47.

  DOI: 10.1111/jfd.13906 🤝 Collaboration
• 2.

  Kawato, S., Nozaki, R., Kondo, H., Hirono, I. (2023). Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis. .

  DOI: 10.1099/acmi.0.000592.v2 🏠 Primary Lab
• 3.

  Kondo, H., Kamei, H., Murotani, F., Nozaki, R., Yazawa, R., Tani, R., Koiwai, K., Hirono, I. (2023). A novel liver-specific immunoglobulin heavy chain-like gene in a cartilaginous fish. Fish and Shellfish Immunology Reports, 5, 100102.

  DOI: 10.1016/j.fsirep.2023.100102 🏠 Primary Lab
• 4.

  Saito, H., Lau, L., Minami, S., Yuguchi, M., Shitara, A., Kondo, H., Kato, G., Sano, M. (2023). Adoptive transfer of sensitized leukocytes confers partial protection against herpesviral hematopoietic necrosis (HVHN) in ginbuna crucian carp Carassius auratus langsdorfii immunized with a live attenuated vaccine. Developmental & Comparative Immunology, 148, 105001.

  DOI: 10.1016/j.dci.2023.105001 🤝 Collaboration
• 5.

  Jaengphop, C., Phurahong, T., Hirono, I., Sirisuay, S., Areechon, N., Unajak, S. (2023). Novel, rapid, and sensitive colorimetric detection of leucomalachite green using a specific aptamer. Fisheries Science, 89, 809-821.

  DOI: 10.1007/s12562-023-01723-4 🤝 Collaboration
• 6.

  Eurlaphan, C., Nozaki, R., Sano, M., Koiwai, K., Hirono, I., Kondo, H. (2023). Red sea bream iridovirus infection downregulates inflammation‐related genes in the spleen of rock bream (Oplegnathus fasciatus). Journal of Fish Diseases, 46, 1403-1411.

  DOI: 10.1111/jfd.13858 🏠 Primary Lab
• 7.

  Proespraiwong, P., Mavichak, R., Imaizumi, K., Hirono, I., Unajak, S. (2023). Evaluation of Bacillus spp. as Potent Probiotics with Reduction in AHPND-Related Mortality and Facilitating Growth Performance of Pacific White Shrimp (Litopenaeus vannamei) Farms. Microorganisms, 11, 2176.

  DOI: 10.3390/microorganisms11092176 🤝 Collaboration
• 8.

  Kawato, S., Omine, R., Teruya, S., Kubo, H., Yasumoto, S., Kondo, M., Takahashi, Y., Nozaki, R., Kondo, H., Hirono, I. (2023). Evolutionary genomics of white spot syndrome virus. Fisheries Science, 89, 769-783.

  DOI: 10.1007/s12562-023-01715-4 🏠 Primary Lab
• 9.

  Imaizumi, K., Sano, M., Kondo, H., Hirono, I. (2023). Insights Into a Chitin Synthase of Kuruma Shrimp Penaeus japonicus and Its Role in Peritrophic Membrane and Cuticle Formation. Marine Biotechnology, 25, 837-845.

  DOI: 10.1007/s10126-023-10244-1 🏠 Primary Lab
• 10.

  Koiwai, K., Kondo, H., Hirono, I. (2023). scRNA-seq Analysis of Hemocytes of Penaeid Shrimp Under Virus Infection. Marine Biotechnology.

  DOI: 10.1007/s10126-023-10221-8 🏠 Primary Lab
• 11.

  Tansutaphanit, S., Haga, Y., Kabeya, N., Matsushita, Y., Kondo, H., Hirono, I., Satoh, S. (2023). Impact of purine nucleotide on fatty acid metabolism and expression of lipid metabolism-related gene in the liver cell of rainbow trout Oncorhynchus mykiss. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 266, 110845.

  DOI: 10.1016/j.cbpb.2023.110845 🤝 Collaboration
• 12.

  SiouNing, A., Seong, T., Kondo, H., Bhassu, S. (2023). MicroRNA Regulation in Infectious Diseases and Its Potential as a Biosensor in Future Aquaculture Industry: A Review. Molecules, 28, 4357.

  DOI: 10.3390/molecules28114357 🤝 Collaboration
• 13.

  Ng, Y., Cheng, C., Ando, M., Tseng, Y., He, S., Li, C., Cheng, S., Chen, Y., Kumar, R., Liu, C., Takeyama, H., Hirono, I., Wang, H. (2023). White spot syndrome virus (WSSV) modulates lipid metabolism in white shrimp. Communications Biology, 6.

  DOI: 10.1038/s42003-023-04924-w 🤝 Collaboration
• 14.

  Mahmoud, M., Abdelsalam, M., Kawato, S., Harakawa, S., Kawakami, H., Hirono, I., Kondo, H. (2023). Comparative genome analyses of three serotypes of Lactococcus bacteria isolated from diseased cultured striped jack (Pseudocaranx dentex). Journal of Fish Diseases, 46, 829-839.

  DOI: 10.1111/jfd.13792 🤝 Collaboration
• 15.

  Wang, L., Yoshii, K., Murase, N., Yamada, H., Fukuda, Y., Hirono, I., Kondo, H. (2023). Type I interferon induced by polyinosinic-polycytidylic acid does not contribute to the efficacy of a formalin-killed cell vaccine against Edwardsiella piscicida in the Japanese flounder (Paralichthys olivaceus). Fish & Shellfish Immunology, 135, 108680.

  DOI: 10.1016/j.fsi.2023.108680 🏠 Primary Lab
• 16.

  Rathnapala, J., Ragab, W., Kawato, S., Furukawa, M., Nozaki, R., Kondo, H., Hirono, I. (2023). Genomic characterization and identification of virulence‐related genes in Vibrio nigripulchritudo isolated from white leg shrimp Penaeus vannamei. Journal of Fish Diseases, 46, 779-790.

  DOI: 10.1111/jfd.13786 🏠 Primary Lab
• 17.

  Kawato, S., Fujishima, S., Nozaki, R., Kondo, H., Isshiki, T., Hirono, I. (2023). Genome sequence of Chionoecetes opilio bacilliform virus, a nimavirus infecting the snow crab Chionoecetes opilio. Archives of Virology, 168.

  DOI: 10.1007/s00705-023-05731-8 🏠 Primary Lab
• 18.

  Takase, K., Nozaki, R., Harakawa, A., Yokota, M., Hirono, I., Kondo, H. (2023). Effect of autoantibody against follicle stimulating hormone (Fsh) induced by DNA vaccine in rainbow trout Oncorhynchus mykiss. Aquaculture, 563, 738931.

  DOI: 10.1016/j.aquaculture.2022.738931 🏠 Primary Lab
• 19.

  Weerachatyanukul, W., Pooljun, C., Hirono, I., Chotwiwatthanakun, C., Jariyapong, P. (2023). Infectivity and virulence of the infectious Macrobrachium rosenbergii nodavirus produced from Drosophila melanogaster cell using Penaeus merguiensis as an infection model. Fish & Shellfish Immunology, 132, 108474.

  DOI: 10.1016/j.fsi.2022.108474 🤝 Collaboration

2022

• 1.

  Pooljun, C., Jariyapong, P., Wongtawan, T., Hirono, I., Wuthisuthimethavee, S. (2022). Effect of feeding different types of β-glucans derived from two marine diatoms (Chaetoceros muelleri and Thalassiosira weissflogii) on growth performance and immunity of banana shrimp (Penaeus merguiensis). Fish & Shellfish Immunology, 130, 512-519.

  DOI: 10.1016/j.fsi.2022.09.047 🤝 Collaboration
• 2.

  Kannika, K., Sirisuay, S., Kondo, H., Hirono, I., Areechon, N., Unajak, S. (2022). Trial Evaluation of Protection and Immunogenicity of Piscine Bivalent Streptococcal Vaccine: From the Lab to the Farms. Vaccines, 10, 1625.

  DOI: 10.3390/vaccines10101625 🤝 Collaboration
• 3.

  Kondo, H., Murotani, F., Koiwai, K., Hirono, I. (2022). Chicken-type lysozyme is a major bacteriolytic enzyme in the blood of the banded houndshark Triakis scyllium. Developmental & Comparative Immunology, 134, 104448.

  DOI: 10.1016/j.dci.2022.104448 🏠 Primary Lab
• 4.

  Jirapongpairoj, W., Nozaki, R., Koiwai, K., Hirono, I., Kondo, H. (2022). Identification of a rabbit Ig light chain recombinant protein bound to serum immunoglobulins from different marine fish species. Fish & Shellfish Immunology, 127, 939-947.

  DOI: 10.1016/j.fsi.2022.07.032 🏠 Primary Lab
• 5.

  Chamtim, P., Suwan, E., Dong, H., Sirisuay, S., Areechon, N., Wangkahart, E., Hirono, I., Mavichak, R., Unajak, S. (2022). Combining segments 9 and 10 in DNA and recombinant protein vaccines conferred superior protection against tilapia lake virus in hybrid red tilapia (oreochromis sp.) compared to single segment vaccines. Frontiers in Immunology, 13.

  DOI: 10.3389/fimmu.2022.935480 🤝 Collaboration
• 6.

  Ishihara, H., Harakawa, S., Kawakami, H., Yoshii, K., Murase, N., Yamada, H., Fukuda, Y., Nozaki, R., Kawato, S., Koiwai, K., Hirono, I., Kondo, H. (2022). Whole‐genome analysis of red sea bream iridovirus spread in 2021 in Japan provided epidemiological and viral traits insight. Journal of Fish Diseases, 45, 1593-1597.

  DOI: 10.1111/jfd.13690 🏠 Primary Lab
• 7.

  Imaizumi, K., Molex, W., Jitnavee, C., Direkbusarakom, S., Kondo, H., Hirono, I. (2022). Bacterial and eukaryotic communities in pond water of whiteleg shrimp Litopenaeus vannamei and the bacterial communities of their stomach and midgut. Aquaculture, 554, 738139.

  DOI: 10.1016/j.aquaculture.2022.738139 🏠 Primary Lab
• 8.

  Ushiyama, R., Koiwai, K., Suzuki, H. (2022). Plug-and-play microfluidic production of monodisperse giant unilamellar vesicles using droplet transfer across Water–Oil interface. Sensors and Actuators B: Chemical, 355, 131281.

  DOI: 10.1016/j.snb.2021.131281 🤝 Collaboration
• 9.

  Ragab, W., Kawato, S., Nozaki, R., Kondo, H., Hirono, I. (2022). Comparative genome analyses of five Vibrio penaeicida strains provide insights into their virulence-related factors. Microbial Genomics, 8.

  DOI: 10.1099/mgen.0.000766 🏠 Primary Lab
• 10.

  Weerachatyanukul, W., Pooljun, C., Hirono, I., Kondo, H., Chotwiwatthanakun, C., Jariyapong, P. (2022). Infectious hypodermal and hematopoietic necrosis virus-like particle (IHHNV-VLP) induces peroxiredoxin expression and activity in Fenneropenaeus merguiensis. Fish & Shellfish Immunology, 121, 53-61.

  DOI: 10.1016/j.fsi.2021.12.015 🤝 Collaboration
• 11.

  Jaree, P., Boonchuen, P., Thawonsuwan, J., Kondo, H., Hirono, I., Somboonwiwat, K. (2022). Transcriptome profiling reveals the novel immunometabolism-related genes against WSSV infection from Fenneropenaeus merguiensis. Fish & Shellfish Immunology, 120, 31-44.

  DOI: 10.1016/j.fsi.2021.11.006 🤝 Collaboration

2021

• 1.

  Sakulworakan, R., Chokmangmeepisarn, P., Dinh-Hung, N., Sivaramasamy, E., Hirono, I., Chuanchuen, R., Kayansamruaj, P., Rodkhum, C. (2021). Insight Into Whole Genome of Aeromonas veronii Isolated From Freshwater Fish by Resistome Analysis Reveal Extensively Antibiotic Resistant Traits. Frontiers in Microbiology, 12.

  DOI: 10.3389/fmicb.2021.733668 🤝 Collaboration
• 2.

  Kondo, H., Kikumoto, T., Yoshii, K., Murase, N., Yamada, H., Fukuda, Y., Hirono, I. (2021). Effects of Peptidoglycan and Polyinosinic: Polycytidylic Acid on the Recombinant Subunit Vaccine Efficacy Against <i>Edwardsiella tarda</i> in Japanese Flounder <i>Paralichthys olivaceus</i>. Fish Pathology, 56, 149-155.

  DOI: 10.3147/jsfp.56.149 🏠 Primary Lab
• 3.

  Sato, M., Kawato, S., Oyama, H., Kaneko, G., Post, E., Suo, R., Takai, N., Sugita, H., Kondo, H., Hirono, I., Itoi, S. (2021). Phylogenetic position of the Atlantic Gnomefish, Scombrops oculatus (Teleostei: Scombropidae), within the genus Scombrops, inferred from the sequences of complete mitochondrial genome and cytochrome c oxidase subunit I genes. Mitochondrial DNA Part B, 6, 2852-2855.

  DOI: 10.1080/23802359.2021.1971118 🏠 Primary Lab
• 4.

  Kerddee, P., Dinh‐Hung, N., Dong, H., Hirono, I., Soontara, C., Areechon, N., Srisapoome, P., Kayansamruaj, P. (2021). Molecular evidence for homologous strains of infectious spleen and kidney necrosis virus (ISKNV) genotype I infecting inland freshwater cultured Asian sea bass (Lates calcarifer) in Thailand. Archives of Virology, 166, 3061-3074.

  DOI: 10.1007/s00705-021-05207-7 🤝 Collaboration
• 5.

  Kagaya, K., Kogure, R., Okai, M., Kawato, S., Kondo, H., Hirono, I., Ishida, M. (2021). Draft Genome Sequences of the Lipid-Degrading Bacteria Moritella sp. Strains F1 and F3, Isolated from Mesopelagic Seawater from the Sagami Trough, in Japan. Microbiology Resource Announcements, 10.

  DOI: 10.1128/MRA.00046-21 🤝 Collaboration
• 6.

  Kawato, S., Nozaki, R., Hirono, I., Kondo, H. (2021). Genome Sequence of Lymphocystis Disease Virus 2 LCDV-JP_Oita_2018, Isolated from a Diseased Japanese Flounder (Paralichthys olivaceus) in Japan. Microbiology Resource Announcements, 10.

  DOI: 10.1128/MRA.00547-21 🏠 Primary Lab
• 7.

  Murakami, T., Koiwai, K., Suzuki, H. (2021). Applying deterministic lateral displacement cell separation on immune cells of Marine shrimp. Sensors and Actuators B: Chemical, 347, 130587.

  DOI: 10.1016/j.snb.2021.130587 🤝 Collaboration
• 8.

  Kawato, S., Nishitsuji, K., Arimoto, A., Hisata, K., Kawamitsu, M., Nozaki, R., Kondo, H., Shinzato, C., Ohira, T., Satoh, N., Shoguchi, E., Hirono, I. (2021). Genome and transcriptome assemblies of the kuruma shrimp,Marsupenaeus japonicus. G3 Genes|Genomes|Genetics, 11.

  DOI: 10.1093/g3journal/jkab268 🏠 Primary Lab
• 9.

  Zhao, B., Diao, J., Li, L., Kondo, H., Li, L., Hirono, I. (2021). Molecular characterization and expression analysis of Japanese flounder (Paralichthys olivaceus) chemokine receptor CXCR2 in comparison with CXCR1. Developmental & Comparative Immunology, 120, 104047.

  DOI: 10.1016/j.dci.2021.104047 🏠 Primary Lab
• 10.

  Kondo, H., Fujimura, T., Murotani, F., Yazawa, R., Tani, R., Hirono, I. (2021). Preliminary characterization of pathogen-detection activities of serum antibodies from the banded houndshark Triakis scyllium. Developmental & Comparative Immunology, 124, 104186.

  DOI: 10.1016/j.dci.2021.104186 🏠 Primary Lab
• 11.

  Koiwai, K., Koyama, T., Tsuda, S., Toyoda, A., Kikuchi, K., Suzuki, H., Kawano, R. (2021). Single-cell RNA-seq analysis reveals penaeid shrimp hemocyte subpopulations and cell differentiation process. eLife, 10.

  DOI: 10.7554/eLife.66954 🏠 Primary Lab
• 12.

  Imaizumi, K., Tinwongger, S., Kondo, H., Hirono, I. (2021). Analysis of microbiota in the stomach and midgut of two penaeid shrimps during probiotic feeding. Scientific Reports, 11.

  DOI: 10.1038/s41598-021-89415-w 🏠 Primary Lab
• 13.

  Sakseepipad, C., Nozaki, R., Yoshii, K., Fukuda, Y., Mizuno, K., Kawakami, H., Hirono, I., Kondo, H. (2021). Development of single nucleotide polymorphism (SNP) application for detection and genotyping of RSIV‐type megalocytiviruses. Journal of Fish Diseases, 44, 1337-1342.

  DOI: 10.1111/jfd.13392 🏠 Primary Lab
• 14.

  Nakamura, K., Gonzales-Plasus, M., Ushigusa-Ito, T., Masuda, R., Kabeya, N., Kondo, H., Hirono, I., Satoh, S., Haga, Y. (2021). Taurine synthesis via the cysteic acid pathway: effect of dietary cysteic acid on growth, body taurine content, and gene expression of taurine-synthesizing enzymes, growth hormone, and insulin-like growth factor 1 in Japanese flounder Paralichthys olivaceus. Fisheries Science, 87, 353-363.

  DOI: 10.1007/s12562-021-01500-1 🤝 Collaboration
• 15.

  Akita, S., Koiwai, K., Ishikawa, T., Sakamoto, T., Yoshimura, T., Kiyomoto, S., Nanri, K., Tamayama-Kato, Y., Kurashima, A., Hanyuda, T., Shimada, S., Kawai, H., Fujita, D. (2021). Molecular evidence for naturally occurring intra- and inter-generic hybridization in the genusEcklonia(Laminariales, Phaeophyceae). Phycologia, 60, 170-179.

  DOI: 10.1080/00318884.2021.1885246 🤝 Collaboration
• 16.

  Ahmed, R., Chanthra, N., Anzai, T., Koiwai, K., Murakami, T., Suzuki, H., Hanazono, Y., Uosaki, H. (2021). Sarcomere Shortening of Pluripotent Stem Cell-Derived Cardiomyocytes using Fluorescent-Tagged Sarcomere Proteins.. Journal of Visualized Experiments.

  DOI: 10.3791/62129 🤝 Collaboration

2020

• 1.

  Kawato, S., Lu, J., Nozaki, R., Kondo, H., Hirono, I. (2020). Genome Sequence of Vibrio nigripulchritudo Strain TUMSAT-TG-2018, Isolated from Diseased Pacific White Shrimp, Litopenaeus vannamei. Microbiology Resource Announcements, 9.

  DOI: 10.1128/MRA.01206-20 🏠 Primary Lab
• 2.

  Thammasorn, T., Nozaki, R., Kondo, H., Hirono, I. (2020). Investigation of essential cell cycle regulator genes as candidates for immortalized shrimp cell line establishment based on the effect of in vitro culturing on gene expression of shrimp primary cells. Aquaculture, 529, 735733.

  DOI: 10.1016/j.aquaculture.2020.735733 🏠 Primary Lab
• 3.

  Yasumoto, K., Koiwai, K., Hiraoka, K., Hirono, I., Kondo, H. (2020). Characterization of natural antigen-specific antibodies from naïve sturgeon serum. Developmental & Comparative Immunology, 112, 103770.

  DOI: 10.1016/j.dci.2020.103770 🏠 Primary Lab
• 4.

  Fauzi, I., Haga, Y., Kondo, H., Hirono, I., Satoh, S. (2020). Dietary citrulline improves survival of rainbow trout Oncorhynchus mykiss juveniles challenged with Vibrio anguillarum. Aquaculture, 528, 735491.

  DOI: 10.1016/j.aquaculture.2020.735491 🤝 Collaboration
• 5.

  Kondo, H., Sano, H., Wang, Y., Kawase, J., Shimanoki, E., Jirapongpairoj, W., Nozaki, R., Hirono, I. (2020). Starvation–refeeding causes cellular stress responses in the gut and liver of Masu salmon Oncorhynchus masou masou. Fisheries Science, 86, 1037-1042.

  DOI: 10.1007/s12562-020-01464-8 🏠 Primary Lab
• 6.

  Palang, I., Hirono, I., Senapin, S., Sirimanapong, W., Withyachumnarnkul, B., Vanichviriyakit, R. (2020). Cytotoxicity of Streptococcus agalactiae secretory protein on tilapia cultured cells. Journal of Fish Diseases, 43, 1229-1236.

  DOI: 10.1111/jfd.13230 🤝 Collaboration
• 7.

  Pedrosa‐Gerasmio, I., Nozaki, R., Kondo, H., Hirono, I. (2020). Gut bacterial community profile in Pacific white shrimp Litopenaeus vannamei following 5‐aminolevulinic acid supplementation. Aquaculture Research, 51, 4075-4086.

  DOI: 10.1111/are.14750 🏠 Primary Lab
• 8.

  Kiataramgul, A., Maneenin, S., Purton, S., Areechon, N., Hirono, I., Brocklehurst, T., Unajak, S. (2020). An oral delivery system for controlling white spot syndrome virus infection in shrimp using transgenic microalgae. Aquaculture, 521, 735022.

  DOI: 10.1016/j.aquaculture.2020.735022 🤝 Collaboration
• 9.

  Pedrosa-Gerasmio, I., Kondo, H., Hirono, I. (2020). Molecular cloning, characterization and gene expression analysis of aminolevulinic acid synthase in Litopenaeus vannamei. Gene, 736, 144421.

  DOI: 10.1016/j.gene.2020.144421 🏠 Primary Lab
• 10.

  Kawato, S., Nozaki, R., Kondo, H., Hirono, I. (2020). Draft Genome Sequences of Vibrio atypicus Strains DSM 25292 ^T and TUMSAT1. Microbiology Resource Announcements, 9.

  DOI: 10.1128/MRA.01526-19 🏠 Primary Lab
• 11.

  Pumchan, A., Krobthong, S., Roytrakul, S., Sawatdichaikul, O., Kondo, H., Hirono, I., Areechon, N., Unajak, S. (2020). Novel Chimeric Multiepitope Vaccine for Streptococcosis Disease in Nile Tilapia (Oreochromis niloticus Linn.). Scientific Reports, 10.

  DOI: 10.1038/s41598-019-57283-0 🤝 Collaboration